PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972055.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 271aa    MW: 31015.8 Da    PI: 8.1337
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l d++  +G g+W++++ + g+ R +k+c++rw +yl
   XP_024972055.1 15 KGLWSPDEDQKLRDYILNHGLGCWSAVSTHAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding46.11.1e-1468113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T  E+e+++ ++ +lG++ W+  +++++ gRt++++k++w++y+
   XP_024972055.1  68 RGIFTRHEEEIILTLHGMLGNK-WSQMSQHLP-GRTDNEIKNHWHSYM 113
                      6789******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MRSKSSENAK LKHKKGLWSP DEDQKLRDYI LNHGLGCWSA VSTHAGLQRN GKSCRLRWIN  60
YLRPGLKRGI FTRHEEEIIL TLHGMLGNKW SQMSQHLPGR TDNEIKNHWH SYMKKKVENL  120
ENTKSRAVFL DTQKIPSPLN YTRGDSSLES SGHLEGSSTP YSEADGSRKL PKIIFADWLA  180
LDQFRNFDTS YRSLVSRNTY RYSSDLQKSV MNGSGQLNEG SSYGLVDHQD VENDLYDLIC  240
ADKMCQNLSY SDVSLYSCDD LASLTQDFFI C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.12e-55MYB family protein