PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972061.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 195aa MW: 21317.1 Da PI: 9.059

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139	1.6e-43	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear+rdPvyG+vgvi+ lq q+++l+++l+ XP_024972061.1 10 PCAACKFLRRKCLSGCIFAPYFPPENPQKFINVHKVFGASNVTKLLNDVLPHQREDAVNSLAYEAEARVRDPVYGCVGVISFLQIQVDRLQKDLD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++k+ XP_024972061.1 105 AAKA 108 9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MASSSSYNSP CAACKFLRRK CLSGCIFAPY FPPENPQKFI NVHKVFGASN VTKLLNDVLP 60 HQREDAVNSL AYEAEARVRD PVYGCVGVIS FLQIQVDRLQ KDLDAAKADL IHCSRNTTIP 120 AAMSPHLSSI QPAISRQRAM DHNFHGRRFS SDGGGGFHQP PPPSYLYHNV NRPWNCHYPY 180 NSRGGGGAGG GGGNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	2e-68	LBD family protein