PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972079.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 184aa MW: 20834.5 Da PI: 10.7737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.1e-07	138	164	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h+ +Er RR++iN+++ L++++P + XP_024972079.1 138 RHSLAERVRRKKINERMKLLQSIVPGC 164 599**********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MAAFSHHHHL FLHQTTAFHP HSTTHNFSGH QPTTAFHPHS TTHNFSVHQP TTTAAAAACL 60 LDQDHHHRTK NLQRKGYSTS MEVDGGSHDH LAMKRKAING ISQDTRKGKR KKQKKSGDDE 120 GEIGYIHVRA RSGQATNRHS LAERVRRKKI NERMKLLQSI VPGCDQVIAS SYVDRIWFIL 180 SVFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	112	KRKAINGISQDTRKGKRKK
2	94	115	KRKAINGISQDTRKGKRKKQKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	9e-20	bHLH family protein