PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972162.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24906.4 Da    PI: 8.2087
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i++s+gk+yey+s
  XP_024972162.1  9 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCS 59
                    79***********************************************96 PP
2K-box81.12.6e-2771161191
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                     yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ged++sL+++eL   e++Le++l++iR+kK+e+ +++ ++ q  e+e+++  
  XP_024972162.1  71 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEELIAYEDALENGLTNIRDKKDEIPKMMRKHEQVLEEENKHLM 161
                     7899*******************************************************************99887777666666665544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MGRGKIEIKR IENTSNRQVT YSKRKNGIIK KAKEITVLCD ANVSLVIYGS SGKMYEYCSP  60
KTNLIDMLDR YQRLSGNKLW DAKHENLQNE IDRIKKENES MQIELRHLKG EDITSLNYEE  120
LIAYEDALEN GLTNIRDKKD EIPKMMRKHE QVLEEENKHL MYLLKVKGDS SENRHKSWWQ  180
QSEMAAMGDY QAHEPFSFRV QPMQPNLHER M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-81MIKC_MADS family protein