PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972164.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 23066.3 Da    PI: 7.1453
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i++s+gk+yey+s
  XP_024972164.1  9 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCS 59
                    79***********************************************96 PP
2K-box79.58e-2771160194
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ged++sL+++eL   e++Le++l++iR+kK+e+ +++ ++ q  e+e++     L
  XP_024972164.1  71 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEELIAYEDALENGLTNIRDKKDEIPKMMRKHEQVLEEENK----HL 160
                     7899*******************************************************************98876666666665554....44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MGRGKIEIKR IENTSNRQVT YSKRKNGIIK KAKEITVLCD ANVSLVIYGS SGKMYEYCSP  60
KTNLIDMLDR YQRLSGNKLW DAKHENLQNE IDRIKKENES MQIELRHLKG EDITSLNYEE  120
LIAYEDALEN GLTNIRDKKD EIPKMMRKHE QVLEEENKHL MYLVQQSEMA AMGDYQAHEP  180
FSFRVQPMQP NLHERM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-85MIKC_MADS family protein