PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972188.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28291.1 Da    PI: 7.5722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_024972188.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFSS 59
                    79***********************************************96 PP
2K-box69.51e-23851769100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +e+ +++s++qe+ +Lk++++ L++  R++ Ge+++sL+ +eL++Le+qL+ slk+iR+ +++ ll+++ e+qk+e++l e nk+Lr +l+e
  XP_024972188.1  85 KEDLQEQSSYQEYMRLKERYDALKQLERNYYGEEIDSLTTNELESLERQLHCSLKQIRTIRTQSLLDKLYEQQKMEHQLYESNKTLRLRLDE 176
                     678899*********************************************************************************88875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGKGRLELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFSST  60
SSMLKTLERY EKCSFGPPEQ RKPAKEDLQE QSSYQEYMRL KERYDALKQL ERNYYGEEID  120
SLTTNELESL ERQLHCSLKQ IRTIRTQSLL DKLYEQQKME HQLYESNKTL RLRLDEESQA  180
EALQWDAHAN GMVYGHPHQM SRDAFYHPIG CETTLQIGYQ TEQMSAVTST SMNHQMQGWL  240
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-96MIKC_MADS family protein