PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972243.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 239aa    MW: 25926 Da    PI: 5.7085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13171216655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l+P+     +k  + a++Le+AveY+k Lq
  XP_024972243.1 171 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ 216
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MMQPTGGGGG GGGGGGGGGG GLARFQSAPA TWLEQLLESD EDVIIDPPKP PLLPHHSIAT  60
ASSAITTTTT FVDPSMAGSG FLRQNSSPAE FLSQINNSDG YFSSYGIPAK ANYDDYLSSR  120
DVSLEDSQIK FTTQMSGDQS ALLDVEMDRI LGDTVPCRVR AKRGFATHPR SIAERVRRTR  180
ISDRIRKLQD LVPNMDKQTN TADMLEEAVE YVKFLQKQIQ DLTDHRNRCT CLVKEQGKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-57bHLH family protein