PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972323.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 790aa    MW: 86601.7 Da    PI: 6.5128
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23154255199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_024972323.1 154 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 245
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++ +r+
  XP_024972323.1 246 GELRLGTRRA 255
                     9999999986 PP
2Auxin_resp110.41.9e-36280361182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+st+++F+v+Y+Pr+s+++Fvv++ k++k++++ +s+G Rfkm+f +++s+err+sG+v+gv d+dp++WpnSkWr+L
  XP_024972323.1 280 VANAVSTNTTFHVFYSPRSSRADFVVPYTKYVKSISNMISMGARFKMKFCMDESPERRFSGVVTGVGDMDPYKWPNSKWRCL 361
                     689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    
MEIDLNHAVS GHNAESCGNE GDSSLSISSN SSNSSLKSPI SNPSASIYME LWHACAGPLT  60
TLPNKGNVVV YFPQGHLEQI ASHSSTHFSP IEVPSLGLPP LIFCKIVDVQ LLANKENDEV  120
YTKLILLPLP EGNLQESEEE GGGVAPVRST PQMFCKTLTA SDTSTHGGFS VPRRAAEDCF  180
PPLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK NLVSGDAVLF  240
LRGEGGELRL GTRRATRPRN VLPDTTMGNL NSYSEILASV ANAVSTNTTF HVFYSPRSSR  300
ADFVVPYTKY VKSISNMISM GARFKMKFCM DESPERRFSG VVTGVGDMDP YKWPNSKWRC  360
LMVRWDEDIG NDHQERISPW EIDLSGGAFP LLSIQSSPRL KKLRAGLHAT PSGHPATARG  420
GYVDFEESVV RSSKVLQGQE NVGPVSPLYG RDKMNSLSFG VQPSMHPSFP PNGMMMARST  480
NFVGEIMRST HHQPLPATPY SGFLESDNAR FPKVLQGQEI CSLRSLTGKP NIGSWGPPRT  540
DVGNGRRNVL NMYRSPENPG FYPLGSEGGR NFGFPNTGVC EARPNPGPAM PTNFTRFPIV  600
PPSIGNGIMR DNVGELQVPV EKIVGATIEP NSSSEKDDGA SDSIESSCKL FGFPLNEVAP  660
LVDAKSLNKR SCTKVHKQGN KVGRAIDLSK MSSYGELFLE LESLFNMEGM FSNPNGGWRL  720
LYTDEENDMM VVGDDPWDEF ARMATKIHIY SAEEVEKLMS SGVISDNTSC LEEAPAVVDT  780
AKSSSVGHPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein