PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972429.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 339aa MW: 37103 Da PI: 9.9984

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	267	324	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYe+eHnh+ XP_024972429.1 267 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYESEHNHS 324 99**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MALEFMDSCR NTTFLAKMEE TAVKEAGAAG IRSLENLIGL LSSHCHRKPS YSVATTDYVT 60 VADAAVTKFK KFISLLDRSC TGHARFRRGP VTDPPVVSEK KVTLASTAVN NSQKYHQTSV 120 ATAEMGYSAP PIQQRMPQLP QVSDHRPLVK SGSFDRKDVP TTTINFAAAA ASPANSFMSS 180 LTGDTEGLQP SMSSGFQITN LSQVSSAGQP NLSSSSFKRK CNSTDDSHTR CTNSSGRCHC 240 SKKRKSRMKR VVRVPAISLK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSLRGCPAR 300 KHVERALDDP TMLIVTYESE HNHSLNVKDS SATIIFESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	3e-67	WRKY family protein