PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972591.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28028 Da    PI: 9.078
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_024972591.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box100.91.7e-33811738100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     s+ e+++++ ++e+ +Lk+++e Lqr+qR+llGedL +L+ keL++Le+qLe sl+kiRs+K++ +l+q+ +lq+ke+ l e+nkaLrkklee
  XP_024972591.1  81 SQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLNTKELEHLEHQLEMSLRKIRSTKTQCMLDQLADLQRKEQVLAETNKALRKKLEE 173
                     4678999***********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMVKTLEKY HSCSYGSLKA SQPENESQYN YHEYLRLKAR VEVLQRSQRN LLGEDLAPLN  120
TKELEHLEHQ LEMSLRKIRS TKTQCMLDQL ADLQRKEQVL AETNKALRKK LEESAQEFPV  180
RQMWEGAQTI PYNPLPTHSE DFFQPLGLNS AMHNRYNPIG SDEMNVAGVN ANHPNGLFPG  240
WML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.18e-97MIKC_MADS family protein