PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972729.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 243aa    MW: 27493.9 Da    PI: 9.3086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30120179159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++fpr+Y+rC++a +Cpvkkkv+rs ed+++v+ tYegeHnh+
  XP_024972729.1 120 VKDGYQWRKYGQKVTRDNPFPRAYFRCSYApTCPVKKKVQRSVEDQTIVVATYEGEHNHP 179
                     58***************************99****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MIPPMTEHDE EAGDLAEELN RVNMENKKLT QMIKSMNTKY NLLQSRLSDY VTKNPDRSAA  60
GAATATAKRK PETPISGNSE SNSSNEINTC KKPTKDEHNI RPKISRVFVR SEASKTGLVV  120
KDGYQWRKYG QKVTRDNPFP RAYFRCSYAP TCPVKKKVQR SVEDQTIVVA TYEGEHNHPQ  180
PSRHELVSPG LRQTVTAAKP WSTVPTVTLD LTNPLEFDGD NEGSRITERS ELQQFLVGQW  240
HLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-56WRKY family protein