PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972784.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 329aa    MW: 36033.1 Da    PI: 5.9768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20153203256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a+++a+ kl+ge
  XP_024972784.1 153 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDVAEEAALAYDNAAYKLRGE 203
                     59******9.**********955...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MTSATMEFWD TVGFQHSSSS TVAGGELMEA LEPFIKSASP DYRSTLSSTS PSTSYSYPSS  60
SFSPSFSPPS SSTQQPFGSY PDCYSNGFSI QDPFGYEQPG SSVGLNQLTP SQIYQIQAQI  120
NLPLPTNGTS LNYLSPKPVP MKKVGSPPKP TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  180
GTFDVAEEAA LAYDNAAYKL RGENARLNFP HLRHHWSQIG GECSDYKPLH SSVDAKLQAI  240
CQILAEGKSI DGCKKSRRSS AAKPKTVVEQ AEVVKVEGSE SEGISGSGDS SPSSELTFPE  300
LTVEESAWCD SENFSLEKCP SYEIDWGAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-63ERF family protein