PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972815.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 314aa    MW: 35150.3 Da    PI: 7.4133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q G+g+W++++   g+ R+ k+c++rw +yl
   XP_024972815.1 14 KGPWTPEEDIILVSYIQQNGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +Ed  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_024972815.1  67 RGNFTDQEDNMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QNGPGNWRSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEDNMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLSSNS  120
DQENHHHHHG ASTSSSSSGA TTIAKGQWER KLQTDIHKAK QALTEALSLD NKSTTSWQQH  180
QQPPQTTTIP PIHHQPVVLP PPPVNFTATT YALSAENIAR MLPNWLKNSP KSSQTSSESL  240
GPLNHQFPSP PASDHGFKNY SNSEVSETTS FFQDESKPEM PSLSFLEKCL VDDAAAQGHE  300
GLMNMCLEEN DDLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-100MYB family protein