PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972843.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 227aa MW: 25118.9 Da PI: 8.9161

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	31	76	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G+++W++I++++ gR++k+c++rw + XP_024972843.1 31 KGPWSAEEDRILTRLVDTYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 76 79***************************9.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	85	127	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ XP_024972843.1 85 PFSAAEDQTILAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 127 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MESFNRCSSA TSSSSDSSDC SHSARKIDKI KGPWSAEEDR ILTRLVDTYG PRNWSLISKY 60 IKGRSGKSCR LRWCNQLSPN VQHRPFSAAE DQTILAAHAQ YGNRWATIAR LLPGRTDNAV 120 KNHWNSTLKR RQSFVTQTSR SESEKEFLSF GTAHMSPGSV SNGDAAADVD DPMTTLSLAP 180 PGMGGYESAE KRTENVPAGF WDVMKGVIAR EVRDYVTSSF PETSGFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-59	MYB family protein