PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972892.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 261aa    MW: 29989.7 Da    PI: 9.8377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.41.6e-41301621128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrF+Ptd+e+v +yL +kv + +l++ ++i+e+ +i+k++Pwd+p +    e+e yfFsk++ ky +g+r nr  ++gyWkatg dk++++
  XP_024972892.1  30 LPPGFRFQPTDQEIVFQYLVRKVFSCPLPA-SIIPEIvNICKFNPWDFPGE---WEQERYFFSKKEAKYGHGNRVNRRSSDGYWKATGFDKHITR 120
                     79****************************.6787777***********44...46799***********************************9 PP

             NAM  95 k.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k++ +g+kktLvfy +++p++++t+W+mheyrl
  XP_024972892.1 121 CcgnnsssrkKDTITGMKKTLVFY-KTNPSTTRTHWIMHEYRL 162
                     87766655444444**********.6788889*********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MSIEDNKRAE NPKNGVKEKL SFVRDGSIKL PPGFRFQPTD QEIVFQYLVR KVFSCPLPAS  60
IIPEIVNICK FNPWDFPGEW EQERYFFSKK EAKYGHGNRV NRRSSDGYWK ATGFDKHITR  120
CCGNNSSSRK KDTITGMKKT LVFYKTNPST TRTHWIMHEY RLVHSPPSPT TTSNDKKSWI  180
QMGNWVLCHV LLNKRSRKPI EDDNGKKSDS TERQDLTRND TNYKPASSSY SSSSSCGSSV  240
VTLEVSSTKN QFDHEETNNV V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-58NAC family protein