PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972908.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family AP2
Protein Properties Length: 485aa    MW: 54224.2 Da    PI: 6.3494
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-15250309155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_024972908.1 250 SRYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDQEEKAARAYDLAALKYWG 309
                     79*******************655454478446*************************98 PP
2AP246.87.6e-15354403355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_024972908.1 354 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403
                     9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MSDHWLGFSI HHHHSSSMPV MPIHPHQEWR FENGDAAPKL EDFLGAASYS TTAQPDEAAA  60
ASYSTTAQQD QPGATINVNI SPNSHYREYL LTDDDDDDDI VESRDATDCY FSPPPPPPPP  120
PPPCLLYYGY PYYTTATTDQ NPLPNCLIPA TTNEVDVAIP PISEFKSWLR QPSPPPPPSV  180
QTSREQPNNN DYQKCLSLAV TPPTAIISMP SDSPTAHTRK RMVQTKSSTK NSKAVTVARK  240
SVDNFGQRTS RYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DQEEKAARAY  300
DLAALKYWGP TTHINFSLAI YEKELEEMKN MSRQEFVANL RRKSSGFSRG ASMYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF DISRYDVKRI  420
CSSSTLIAGE LAKRSPSALM VEDPLLAITN GDEFADMVWA GTCNQEEQAS ASNMESATPQ  480
EEEPM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-123AP2 family protein