PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972910.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 461aa MW: 51694.3 Da PI: 6.3494

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.7	1.9e-15	250	309	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_024972910.1 250 SRYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDQEEKAARAYDLAALKYWG 309 79*****************655454478446***********************98 PP
2	AP2	46.9	7.1e-15	354	403	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_024972910.1 354 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MSDHWLGFSI HHHHSSSMPV MPIHPHQEWR FENGDAAPKL EDFLGAASYS TTAQPDEAAA 60 ASYSTTAQQD QPGATINVNI SPNSHYREYL LTDDDDDDDI VESRDATDCY FSPPPPPPPP 120 PPPCLLYYGY PYYTTATTDQ NPLPNCLIPA TTNEVDVAIP PISEFKSWLR QPSPPPPPSV 180 QTSREQPNNN DYQKCLSLAV TPPTAIISMP SDSPTAHTRK RMVQTKSSTK NSKAVTVARK 240 SVDNFGQRTS RYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DQEEKAARAY 300 DLAALKYWGP TTHINFSLAI YEKELEEMKN MSRQEFVANL RRKSSGFSRG ASMYRGVTRH 360 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTRELAKR SPSALMVEDP 420 LLAITNGDEF ADMVWAGTCN QEEQASASNM ESATPQEEEP M

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MSDHWLGFSI HHHHSSSMPV MPIHPHQEWR FENGDAAPKL EDFLGAASYS TTAQPDEAAA  60
ASYSTTAQQD QPGATINVNI SPNSHYREYL LTDDDDDDDI VESRDATDCY FSPPPPPPPP  120
PPPCLLYYGY PYYTTATTDQ NPLPNCLIPA TTNEVDVAIP PISEFKSWLR QPSPPPPPSV  180
QTSREQPNNN DYQKCLSLAV TPPTAIISMP SDSPTAHTRK RMVQTKSSTK NSKAVTVARK  240
SVDNFGQRTS RYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DQEEKAARAY  300
DLAALKYWGP TTHINFSLAI YEKELEEMKN MSRQEFVANL RRKSSGFSRG ASMYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTRELAKR SPSALMVEDP  420
LLAITNGDEF ADMVWAGTCN QEEQASASNM ESATPQEEEP M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-105	AP2 family protein