PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972939.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 311aa    MW: 35258.3 Da    PI: 5.6894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.23e-22125186159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy+WrKYGqK++ ++++ r+Y+rCt++   gC+++k+v+ +++ p    itY+g+H+++
  XP_024972939.1 125 VDDGYAWRKYGQKPILNATYQRNYFRCTHKvdqGCQATKQVQMTEDKPPRYRITYNGHHTCK 186
                     59***************************9999***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MESSSWPQSL PSNRIKAIQE LTQGQPLINK LRDMRPEEIE SDLRSADGVV GQILGMFDNT  60
LSILSSTEIP YIPTGDMQSS GSWDGQTSED HDETVKTVTP VKTKRGCYKR RKDSTTYTKL  120
VSNPVDDGYA WRKYGQKPIL NATYQRNYFR CTHKVDQGCQ ATKQVQMTED KPPRYRITYN  180
GHHTCKDLLR SPQIIFDSPD PSNTSIILNF ETKGFTENKQ TDTCLSSMRQ NRKEGFPSLW  240
LKHNQSYSSW DLTAQVSEVP SKPVSVMSSG VDHEDMISSE VYSSTCCTRG YDEIDDLIGN  300
NVFSDLFELC P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-35WRKY family protein