PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972976.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1032aa MW: 115891 Da PI: 9.3082

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	1002	1028	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg+sF+ s++ rH r+ H XP_024972976.1 1002 YTCTteGCGRSFRFVSDFSRHKRKtgH 1028 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence
MADEVFPWLK SLPLAPEYHP TLTEFQDPIG YIFKIEDEAS KYGICKIVPP VSASPKKTTI 60 ANLNQSLSAQ NPDSSPTFTT RQQQIGFCPR RHRRPVHKSV WQSGETYTLP QFEAKAKNFE 120 KNYMKKGSNS KKGFTALEME TLYWKAQMDK PFLIEYANDI PGSAFHQTGG GCGGKKQGIK 180 EIGDGLTVGE TGWNMREVSR AKGSLLKFVK EEIPGVTSPM VYMAMMFSWF AWHVEDHEFH 240 SLNYMHMGAG KTWYGVPKDA AVVFEDVIRD HGYGGEINPI LTFATLGEKT TVMSPDVLLK 300 AGVPCCRLVQ KAGEFVVTFP RAYHSGFSHG FNCAEAANIA TPGWLRVARD AAIRRASVNS 360 APMVSHFQLL YDLAVSLSAS VRTSIKPQPR SSRSKDMLMA EGEFLVKRLF LHDMMQNNEL 420 LHTLGKGSPI VVLHEDALYS STSKDSCFGS QLNVSPMLPT RGLFSCVRCG ILCYACVAII 480 QPTEATARYL MSVDCRAITD LVAATDVFAA NEDANLVDLK PSSATGSPKV NSALDLLALA 540 YGDHSDSESD IRVNYSSNVS LNISDDGTTT NYNGDRVDGR VKIGESSYRI ANFVRSKCNR 600 FFMESNCSMG RFEYQIQVPH SERKPSSNAN ESEALIIGKS ITQAGNTQMN PTRDDDTSRM 660 HIFCLQHAAE VEQCLRRIGG VRILLLCRQE YPKLETEARL VEKEFGTDHI WTDLEFKEAT 720 KHDKQMIQSA LHKQEATHCN HDWAARLGLD LFHSCKLSRS PLYRKQMPYN SVICKAFVNG 780 SPSSDPVSSK PSSKHKKITV VGKWCGKVWM SNEVHPLLVV RDVEHQERDK TDVSGFSRMD 840 AKLEKRPEIT QVVVIKNLRK RKRKNMTISK PMKFTTMQSS PPPPPSSPLG NLSLSGGFRR 900 QRTRTLRTKK AVESEEGEFG CDIEGCIMSF DNRKDLMAHK KNVCPEKGCG KKLFSHKYLM 960 QHKRVHMDDR PFKCPWKGCQ VTFKWAWART EHVRVHTGAR PYTCTTEGCG RSFRFVSDFS 1020 RHKRKTGHFA KK

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence

MADEVFPWLK SLPLAPEYHP TLTEFQDPIG YIFKIEDEAS KYGICKIVPP VSASPKKTTI  60
ANLNQSLSAQ NPDSSPTFTT RQQQIGFCPR RHRRPVHKSV WQSGETYTLP QFEAKAKNFE  120
KNYMKKGSNS KKGFTALEME TLYWKAQMDK PFLIEYANDI PGSAFHQTGG GCGGKKQGIK  180
EIGDGLTVGE TGWNMREVSR AKGSLLKFVK EEIPGVTSPM VYMAMMFSWF AWHVEDHEFH  240
SLNYMHMGAG KTWYGVPKDA AVVFEDVIRD HGYGGEINPI LTFATLGEKT TVMSPDVLLK  300
AGVPCCRLVQ KAGEFVVTFP RAYHSGFSHG FNCAEAANIA TPGWLRVARD AAIRRASVNS  360
APMVSHFQLL YDLAVSLSAS VRTSIKPQPR SSRSKDMLMA EGEFLVKRLF LHDMMQNNEL  420
LHTLGKGSPI VVLHEDALYS STSKDSCFGS QLNVSPMLPT RGLFSCVRCG ILCYACVAII  480
QPTEATARYL MSVDCRAITD LVAATDVFAA NEDANLVDLK PSSATGSPKV NSALDLLALA  540
YGDHSDSESD IRVNYSSNVS LNISDDGTTT NYNGDRVDGR VKIGESSYRI ANFVRSKCNR  600
FFMESNCSMG RFEYQIQVPH SERKPSSNAN ESEALIIGKS ITQAGNTQMN PTRDDDTSRM  660
HIFCLQHAAE VEQCLRRIGG VRILLLCRQE YPKLETEARL VEKEFGTDHI WTDLEFKEAT  720
KHDKQMIQSA LHKQEATHCN HDWAARLGLD LFHSCKLSRS PLYRKQMPYN SVICKAFVNG  780
SPSSDPVSSK PSSKHKKITV VGKWCGKVWM SNEVHPLLVV RDVEHQERDK TDVSGFSRMD  840
AKLEKRPEIT QVVVIKNLRK RKRKNMTISK PMKFTTMQSS PPPPPSSPLG NLSLSGGFRR  900
QRTRTLRTKK AVESEEGEFG CDIEGCIMSF DNRKDLMAHK KNVCPEKGCG KKLFSHKYLM  960
QHKRVHMDDR PFKCPWKGCQ VTFKWAWART EHVRVHTGAR PYTCTTEGCG RSFRFVSDFS  1020
RHKRKTGHFA KK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	856	862	KNLRKRK
2	859	864	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein