PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972997.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Dof

Protein Properties

Length: 447aa MW: 49128.7 Da PI: 8.5266

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.3	2.9e-37	135	194	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++r +PvG+grrknk+ XP_024972997.1 135 PDKTIPCPRCNSMDTKFCYYNNYNVKQPRHFCKSCQRYWTAGGTMRSMPVGAGRRKNKNP 194 7899*****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEATGIKLFG KNIAYQDRGR ITTNLPVFST ATATATATAT AAESSDGSYG EHGCFKHGHG 60 LRREETCLKE EDSKREHSDK DQIREKKQEN KSSPKAVVAE SDGNPKTPIT EDTDTSKTET 120 LNNATNLQSE DLKKPDKTIP CPRCNSMDTK FCYYNNYNVK QPRHFCKSCQ RYWTAGGTMR 180 SMPVGAGRRK NKNPTSHYGF VTISKAAQIE VTASNGVHGV PSKVISFGSV SPHVDSVRAS 240 AVSCRERENG DDCSSGSSVT TSNSVTEKMQ DRNGFHSHLP CIPGVSWSYN PWNSAIPIPG 300 VCPTGYSPMS MPFYPSPYWN YIPWLPPSSH TQNQNVQSAT DLNSFILGKH SRDGELINPN 360 GSEEPKKQKS SILIPKTLRI DDPDEAAKSS IWSTLGIKNE NFGPRGVFKA FQTKDEETKQ 420 HPASTTSPVL HVNPAALSRS LCFQERA

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEATGIKLFG KNIAYQDRGR ITTNLPVFST ATATATATAT AAESSDGSYG EHGCFKHGHG  60
LRREETCLKE EDSKREHSDK DQIREKKQEN KSSPKAVVAE SDGNPKTPIT EDTDTSKTET  120
LNNATNLQSE DLKKPDKTIP CPRCNSMDTK FCYYNNYNVK QPRHFCKSCQ RYWTAGGTMR  180
SMPVGAGRRK NKNPTSHYGF VTISKAAQIE VTASNGVHGV PSKVISFGSV SPHVDSVRAS  240
AVSCRERENG DDCSSGSSVT TSNSVTEKMQ DRNGFHSHLP CIPGVSWSYN PWNSAIPIPG  300
VCPTGYSPMS MPFYPSPYWN YIPWLPPSSH TQNQNVQSAT DLNSFILGKH SRDGELINPN  360
GSEEPKKQKS SILIPKTLRI DDPDEAAKSS IWSTLGIKNE NFGPRGVFKA FQTKDEETKQ  420
HPASTTSPVL HVNPAALSRS LCFQERA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	5e-72	Dof family protein