PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973002.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 241aa MW: 25674.8 Da PI: 9.0504

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H +H XP_024973002.1 90 YKCSVCDKAFGSYQALGGHKASH 112 9*********9999998888777 PP
2	zf-C2H2	11	0.0014	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F++ L H r+H XP_024973002.1 147 HECSICHRCFPTGQALGGHKRRH 169 78*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MAVEALNSPT TATTPLFRQD SGRYLESWTK GKRTKRPRVD QPPSEEEYLA FCLMLLARGG 60 RPDSASGSPP LHRENSPALS IVPPQTQLVY KCSVCDKAFG SYQALGGHKA SHRKNNPAAV 120 VADIEQAAAS TSTASATHSG VGGGRSHECS ICHRCFPTGQ ALGGHKRRHY EGVIGGGRAT 180 SSGVTSSEGV GSTNSQRAFD LNLPAMPEFL PGFADDEVES PHPAKKSRLF PPVKLEIATR 240 H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	9e-55	C2H2 family protein