PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973113.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 635aa MW: 70747.8 Da PI: 6.3696

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_024973113.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGKLWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--AD 217 89**************************986555555..8999*****************************************3..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_024973113.1 218 NGDLCVGIRRA 228 8888**996 PP
2	Auxin_resp	111.6	7.6e-37	266	348	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a+ + +FevvY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt++++ d++rWpnS+Wr+L+ XP_024973113.1 266 ANLAAAGRPFEVVYYPRASTPEFCVKASTVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSIDVDDQTRWPNSPWRLLQ 348 678999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MINVMDHVNK PMNEVDKSLD GQLWHACAGG MVQMPELNSK VFYFPQGHAE HAAAGNGDFR 60 DLPRIAPYVL CGVSAVSFMA DSDTDEVYAK IGLVPLGNHN DCDFDNDGGF LGFDHNKNEN 120 QEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYTA EPPVQTILAK DVHGKLWKFR 180 HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRADNGD LCVGIRRAKR GIGRGFLDSN 240 SSGWNTTIAG IGNSGKVTAE SVIETANLAA AGRPFEVVYY PRASTPEFCV KASTVKAAMR 300 IQWCPGMRFK MAFETEDSSR ISWFMGTISS IDVDDQTRWP NSPWRLLQVA WDEPDLLQNV 360 KRVSPWLVEL VSNMPSIHLS PFSPPRKKLR IPQPPNFPLL PMPSMITNSI PTSIQGARHN 420 PQFGFNHHQK YFNKIQSFPF WSPRFPPRFI ETSQETDENV SCLLTIGNNT NLKNNDDEKD 480 DKKPIFVLFG KPIFTEQQLS ESSSGDTIAN QSDGSVVVQN GPVESSSDEA GPWCKDQKSE 540 FGLETGHCKI FMESEDVGRT LDLATFHSYE ELYRKLADMF SIEKPIMLNN LIYRDSAGAV 600 KHTGDEPFSE FSKTAQRLTI VMDSGSHNVG LLATN

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MINVMDHVNK PMNEVDKSLD GQLWHACAGG MVQMPELNSK VFYFPQGHAE HAAAGNGDFR  60
DLPRIAPYVL CGVSAVSFMA DSDTDEVYAK IGLVPLGNHN DCDFDNDGGF LGFDHNKNEN  120
QEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYTA EPPVQTILAK DVHGKLWKFR  180
HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRADNGD LCVGIRRAKR GIGRGFLDSN  240
SSGWNTTIAG IGNSGKVTAE SVIETANLAA AGRPFEVVYY PRASTPEFCV KASTVKAAMR  300
IQWCPGMRFK MAFETEDSSR ISWFMGTISS IDVDDQTRWP NSPWRLLQVA WDEPDLLQNV  360
KRVSPWLVEL VSNMPSIHLS PFSPPRKKLR IPQPPNFPLL PMPSMITNSI PTSIQGARHN  420
PQFGFNHHQK YFNKIQSFPF WSPRFPPRFI ETSQETDENV SCLLTIGNNT NLKNNDDEKD  480
DKKPIFVLFG KPIFTEQQLS ESSSGDTIAN QSDGSVVVQN GPVESSSDEA GPWCKDQKSE  540
FGLETGHCKI FMESEDVGRT LDLATFHSYE ELYRKLADMF SIEKPIMLNN LIYRDSAGAV  600
KHTGDEPFSE FSKTAQRLTI VMDSGSHNVG LLATN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein