PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973150.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 409aa MW: 44329.5 Da PI: 6.3762

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.3	2.6e-20	205	254	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ a+++++g XP_024973150.1 205 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 254 8******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MCFIKVATNS RDSGDYASLD RDTDEGERRS APPPAPPQPQ PQSPPDMFSS EYSMSGELSA 60 MVTALTHVVS GHGSGGPSVS PLFRSGGGGG SGSGGGYTGN IYSIDSPLST YSSSSSSSFA 120 GQKRVRDQEE SVNQFSEQFH QRSYGGFADF GGGESSSSLV KEEMIPSPTT TMVAATATVT 180 ATATVVQNPM TEMNQSEGTG ERRRKYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA 240 AARAYDDAAL RFRGNRAKLN FPENVRLVPP QTIHPTTQIS NSPGTHLTIL QQPPLQPPHH 300 HFRPPDATAA RDYWQYSQLL QSTSDFHLQQ PRGNLLQQMF NASTMASLHS QTSNHSSSSS 360 TSNYPLLFPN QSSGYLDFRQ PGGTDQVDEE DFPAAPPSWP GPDQFPPPN

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MCFIKVATNS RDSGDYASLD RDTDEGERRS APPPAPPQPQ PQSPPDMFSS EYSMSGELSA  60
MVTALTHVVS GHGSGGPSVS PLFRSGGGGG SGSGGGYTGN IYSIDSPLST YSSSSSSSFA  120
GQKRVRDQEE SVNQFSEQFH QRSYGGFADF GGGESSSSLV KEEMIPSPTT TMVAATATVT  180
ATATVVQNPM TEMNQSEGTG ERRRKYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA  240
AARAYDDAAL RFRGNRAKLN FPENVRLVPP QTIHPTTQIS NSPGTHLTIL QQPPLQPPHH  300
HFRPPDATAA RDYWQYSQLL QSTSDFHLQQ PRGNLLQQMF NASTMASLHS QTSNHSSSSS  360
TSNYPLLFPN QSSGYLDFRQ PGGTDQVDEE DFPAAPPSWP GPDQFPPPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	ERRRKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	9e-29	ERF family protein