PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973183.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 512aa MW: 54958.1 Da PI: 8.6597

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024973183.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15	7.2e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++ + XP_024973183.1 144 WKCERCTKKYAVQSDWKAHMKIC 166 58*******************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MVGFENSSMM AVSGTTVEAT ECDSAGNPTE PPLEMLPSKK KRNLPGNPDP DAEVIALSPK 60 SLVAMNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT GKEIRKRVYV CPEKTCVHHD 120 PLRALGDLTG IKKHFSRKHG EKKWKCERCT KKYAVQSDWK AHMKICGSKE YRCDCGSLFS 180 RRDTFITHRA FCDALAHEST ITQSQTLALS SSDQQSPPTI MEEVVLPTTF SPPPPPLTPS 240 TDVLSPAISF QTPELPENAM VAKVSGATTL TCLATTRATT TASTATTTVS GGSTSNSTSV 300 FPSIYTSSVT IEPMSLSLSS SLYLSNTANP SLFPPPDHNL LHKLHHRYLP ASQPALSATA 360 LLQKAAQMGA KSSNTSFLHA LGLASPSSSS SNHRQDTNNG EWSNVHIKQE RDDNSRLGLG 420 IPFATAATTT TTTSLTDLMM GPPAPTTLDF LGLGMGSGSG GSPGGFSAYL ASTGSGLYSG 480 AGAASAVPLF RGMNSGINKI WDDSDDRKPD RL

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MVGFENSSMM AVSGTTVEAT ECDSAGNPTE PPLEMLPSKK KRNLPGNPDP DAEVIALSPK  60
SLVAMNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT GKEIRKRVYV CPEKTCVHHD  120
PLRALGDLTG IKKHFSRKHG EKKWKCERCT KKYAVQSDWK AHMKICGSKE YRCDCGSLFS  180
RRDTFITHRA FCDALAHEST ITQSQTLALS SSDQQSPPTI MEEVVLPTTF SPPPPPLTPS  240
TDVLSPAISF QTPELPENAM VAKVSGATTL TCLATTRATT TASTATTTVS GGSTSNSTSV  300
FPSIYTSSVT IEPMSLSLSS SLYLSNTANP SLFPPPDHNL LHKLHHRYLP ASQPALSATA  360
LLQKAAQMGA KSSNTSFLHA LGLASPSSSS SNHRQDTNNG EWSNVHIKQE RDDNSRLGLG  420
IPFATAATTT TTTSLTDLMM GPPAPTTLDF LGLGMGSGSG GSPGGFSAYL ASTGSGLYSG  480
AGAASAVPLF RGMNSGINKI WDDSDDRKPD RL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-106	C2H2 family protein