PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973237.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 199aa    MW: 22877 Da    PI: 8.4667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-091970455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + +E++RR +++   +eL +l+P++++++sk  +  +i  + + YI +Lq
  XP_024973237.1 19 ERKTIEKNRRTHMKRLCDELTSLVPSLFSQSSKCFTQDSIFDQSIAYIEQLQ 70
                    5678**********************88766666*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MKETTPMMKK CDGGSKKLER KTIEKNRRTH MKRLCDELTS LVPSLFSQSS KCFTQDSIFD  60
QSIAYIEQLQ KIVERSTEKR IEASRLVNKR DRDNTDYDVR DDQPAVTCDG VRLPTVEVKE  120
FDDGLQVRLT SRSKRNFTFS DVVRIVEDGG GEVVNGGYTT LGEKVFYTLH AKARIPRIGV  180
ETTCIYERLQ ELINEARKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-15bHLH family protein