PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973238.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 195aa    MW: 22397.4 Da    PI: 8.6072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-081966455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + +E++RR +++   +eL +l+P+++       sK +i  + + YI +Lq
  XP_024973238.1 19 ERKTIEKNRRTHMKRLCDELTSLVPSLF----SQSSKDSIFDQSIAYIEQLQ 66
                    5678**********************84....4568888************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MKETTPMMKK CDGGSKKLER KTIEKNRRTH MKRLCDELTS LVPSLFSQSS KDSIFDQSIA  60
YIEQLQKIVE RSTEKRIEAS RLVNKRDRDN TDYDVRDDQP AVTCDGVRLP TVEVKEFDDG  120
LQVRLTSRSK RNFTFSDVVR IVEDGGGEVV NGGYTTLGEK VFYTLHAKAR IPRIGVETTC  180
IYERLQELIN EARKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-14bHLH family protein