PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973375.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1207aa MW: 134435 Da PI: 8.3913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	1089	1114	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C C++sF +k +L +H r+ + XP_024973375.1 1089 FACDmeGCNMSFDSKQELLVHKRNvC 1114 679999****************9877 PP
2	zf-C2H2	13.8	0.00018	1113	1136	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_024973375.1 1113 VCPvkGCGKKFFSHKYLVQHRRVH 1136 69999*****************99 PP
3	zf-C2H2	13	0.00032	1172	1198	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_024973375.1 1172 YVCNedGCGQTFRFVSDFSRHKRKtgH 1198 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1207 aa Download sequence
MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI 60 ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE 120 KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK 180 DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGVTSPM VYISMLFSWF AWHVEDHDFH 240 SLNYMHMGAG KTWYGVPRDA AVAFEDVIRD HGYGGEINPI VTFATLGEKT TIISPEVLLK 300 AGVPCCRLVQ NAGEFVVTFP RAYHSGFSHG FNCGEAANIA TPGWLRVARD AAIRRASINC 360 APMVSHSQLL YDLAVSFSSS VPTSIKPEPR SSRLKDKLKV EGEALVKRLF FQDMMQNNHL 420 LHILAKGSPI VVLPENFIDR RIAFQSNGTS RLSFGLHTQE VDELKSTHSS DSDDDVNLDR 480 KPMRKFSSFC GRNNELSLNG GKDASSSSLA SQTQNTATGR YKGGECDKTH DTGIFSCVTC 540 GILCYASVAI IRPTEATANY LMSADCRGIS DLVAATDLFT NEDASLVDPK SSSGQMPKST 600 RDGLFDVPIK STDEAQTVDD NPGITPATAD QKVNSSLGLL ALAYGDSSDS DDDRVEGDIH 660 TNCSSDLPPN NKTALLGAAS SHGDHHDQDA RGDMKYINDQ TFDCSVEFER NRSLKDSNCL 720 TGKSLIAEQN CLSDVHVSEK AVRQIENTPI TTVCDEESSR MHIFCLEHAL EVEQRLRAVG 780 GVHMLLLCHQ DYSSLDSEAK LVAKELGIDD GWTDIGFREG IQEDKEWIQS ALDSEEATHG 840 NRDWAVKLGI NLFYSASLSR SPLYSKQMPY NFVIYNAFGH NSPSSSPTKP KPSSRQKKIV 900 VAGKWCGKVW MSNQAHPLLV ARDPEEQDDV KPARQSENTQ MVISKNARKR KKNVLESRRM 960 SVKTKFPKVE RSSSPAPAPP PPPVDDLPTL NGGFRRQPRT NLRNKQIRKE TTPRNILDQK 1020 ARQFDMDSER ESETDGGPST RLRKRIIKPP SKELGVKIET KQAIKKQSGI KKAKKPPPAM 1080 EAREEDGEFA CDMEGCNMSF DSKQELLVHK RNVCPVKGCG KKFFSHKYLV QHRRVHMDDR 1140 PLQCPWKGCK MTFKWAWART EHIRVHTGAR PYVCNEDGCG QTFRFVSDFS RHKRKTGHSV 1200 KKQVQER

Sequence ? help Back to Top

Protein Sequence Length: 1207 aa Download sequence

MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI  60
ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE  120
KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK  180
DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGVTSPM VYISMLFSWF AWHVEDHDFH  240
SLNYMHMGAG KTWYGVPRDA AVAFEDVIRD HGYGGEINPI VTFATLGEKT TIISPEVLLK  300
AGVPCCRLVQ NAGEFVVTFP RAYHSGFSHG FNCGEAANIA TPGWLRVARD AAIRRASINC  360
APMVSHSQLL YDLAVSFSSS VPTSIKPEPR SSRLKDKLKV EGEALVKRLF FQDMMQNNHL  420
LHILAKGSPI VVLPENFIDR RIAFQSNGTS RLSFGLHTQE VDELKSTHSS DSDDDVNLDR  480
KPMRKFSSFC GRNNELSLNG GKDASSSSLA SQTQNTATGR YKGGECDKTH DTGIFSCVTC  540
GILCYASVAI IRPTEATANY LMSADCRGIS DLVAATDLFT NEDASLVDPK SSSGQMPKST  600
RDGLFDVPIK STDEAQTVDD NPGITPATAD QKVNSSLGLL ALAYGDSSDS DDDRVEGDIH  660
TNCSSDLPPN NKTALLGAAS SHGDHHDQDA RGDMKYINDQ TFDCSVEFER NRSLKDSNCL  720
TGKSLIAEQN CLSDVHVSEK AVRQIENTPI TTVCDEESSR MHIFCLEHAL EVEQRLRAVG  780
GVHMLLLCHQ DYSSLDSEAK LVAKELGIDD GWTDIGFREG IQEDKEWIQS ALDSEEATHG  840
NRDWAVKLGI NLFYSASLSR SPLYSKQMPY NFVIYNAFGH NSPSSSPTKP KPSSRQKKIV  900
VAGKWCGKVW MSNQAHPLLV ARDPEEQDDV KPARQSENTQ MVISKNARKR KKNVLESRRM  960
SVKTKFPKVE RSSSPAPAPP PPPVDDLPTL NGGFRRQPRT NLRNKQIRKE TTPRNILDQK  1020
ARQFDMDSER ESETDGGPST RLRKRIIKPP SKELGVKIET KQAIKKQSGI KKAKKPPPAM  1080
EAREEDGEFA CDMEGCNMSF DSKQELLVHK RNVCPVKGCG KKFFSHKYLV QHRRVHMDDR  1140
PLQCPWKGCK MTFKWAWART EHIRVHTGAR PYVCNEDGCG QTFRFVSDFS RHKRKTGHSV  1200
KKQVQER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	948	952	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein