PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973376.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1176aa MW: 130696 Da PI: 8.4936

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	1058	1083	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C C++sF +k +L +H r+ + XP_024973376.1 1058 FACDmeGCNMSFDSKQELLVHKRNvC 1083 679999****************9877 PP
2	zf-C2H2	13.8	0.00017	1082	1105	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_024973376.1 1082 VCPvkGCGKKFFSHKYLVQHRRVH 1105 69999*****************99 PP
3	zf-C2H2	13	0.00031	1141	1167	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_024973376.1 1141 YVCNedGCGQTFRFVSDFSRHKRKtgH 1167 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1176 aa Download sequence
MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI 60 ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE 120 KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK 180 DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGVTSPM TWYGVPRDAA VAFEDVIRDH 240 GYGGEINPIV TFATLGEKTT IISPEVLLKA GVPCCRLVQN AGEFVVTFPR AYHSGFSHGF 300 NCGEAANIAT PGWLRVARDA AIRRASINCA PMVSHSQLLY DLAVSFSSSV PTSIKPEPRS 360 SRLKDKLKVE GEALVKRLFF QDMMQNNHLL HILAKGSPIV VLPENFIDRR IAFQSNGTSR 420 LSFGLHTQEV DELKSTHSSD SDDDVNLDRK PMRKFSSFCG RNNELSLNGG KDASSSSLAS 480 QTQNTATGRY KGGECDKTHD TGIFSCVTCG ILCYASVAII RPTEATANYL MSADCRGISD 540 LVAATDLFTN EDASLVDPKS SSGQMPKSTR DGLFDVPIKS TDEAQTVDDN PGITPATADQ 600 KVNSSLGLLA LAYGDSSDSD DDRVEGDIHT NCSSDLPPNN KTALLGAASS HGDHHDQDAR 660 GDMKYINDQT FDCSVEFERN RSLKDSNCLT GKSLIAEQNC LSDVHVSEKA VRQIENTPIT 720 TVCDEESSRM HIFCLEHALE VEQRLRAVGG VHMLLLCHQD YSSLDSEAKL VAKELGIDDG 780 WTDIGFREGI QEDKEWIQSA LDSEEATHGN RDWAVKLGIN LFYSASLSRS PLYSKQMPYN 840 FVIYNAFGHN SPSSSPTKPK PSSRQKKIVV AGKWCGKVWM SNQAHPLLVA RDPEEQDDVK 900 PARQSENTQM VISKNARKRK KNVLESRRMS VKTKFPKVER SSSPAPAPPP PPVDDLPTLN 960 GGFRRQPRTN LRNKQIRKET TPRNILDQKA RQFDMDSERE SETDGGPSTR LRKRIIKPPS 1020 KELGVKIETK QAIKKQSGIK KAKKPPPAME AREEDGEFAC DMEGCNMSFD SKQELLVHKR 1080 NVCPVKGCGK KFFSHKYLVQ HRRVHMDDRP LQCPWKGCKM TFKWAWARTE HIRVHTGARP 1140 YVCNEDGCGQ TFRFVSDFSR HKRKTGHSVK KQVQER

Sequence ? help Back to Top

Protein Sequence Length: 1176 aa Download sequence

MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI  60
ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE  120
KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK  180
DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGVTSPM TWYGVPRDAA VAFEDVIRDH  240
GYGGEINPIV TFATLGEKTT IISPEVLLKA GVPCCRLVQN AGEFVVTFPR AYHSGFSHGF  300
NCGEAANIAT PGWLRVARDA AIRRASINCA PMVSHSQLLY DLAVSFSSSV PTSIKPEPRS  360
SRLKDKLKVE GEALVKRLFF QDMMQNNHLL HILAKGSPIV VLPENFIDRR IAFQSNGTSR  420
LSFGLHTQEV DELKSTHSSD SDDDVNLDRK PMRKFSSFCG RNNELSLNGG KDASSSSLAS  480
QTQNTATGRY KGGECDKTHD TGIFSCVTCG ILCYASVAII RPTEATANYL MSADCRGISD  540
LVAATDLFTN EDASLVDPKS SSGQMPKSTR DGLFDVPIKS TDEAQTVDDN PGITPATADQ  600
KVNSSLGLLA LAYGDSSDSD DDRVEGDIHT NCSSDLPPNN KTALLGAASS HGDHHDQDAR  660
GDMKYINDQT FDCSVEFERN RSLKDSNCLT GKSLIAEQNC LSDVHVSEKA VRQIENTPIT  720
TVCDEESSRM HIFCLEHALE VEQRLRAVGG VHMLLLCHQD YSSLDSEAKL VAKELGIDDG  780
WTDIGFREGI QEDKEWIQSA LDSEEATHGN RDWAVKLGIN LFYSASLSRS PLYSKQMPYN  840
FVIYNAFGHN SPSSSPTKPK PSSRQKKIVV AGKWCGKVWM SNQAHPLLVA RDPEEQDDVK  900
PARQSENTQM VISKNARKRK KNVLESRRMS VKTKFPKVER SSSPAPAPPP PPVDDLPTLN  960
GGFRRQPRTN LRNKQIRKET TPRNILDQKA RQFDMDSERE SETDGGPSTR LRKRIIKPPS  1020
KELGVKIETK QAIKKQSGIK KAKKPPPAME AREEDGEFAC DMEGCNMSFD SKQELLVHKR  1080
NVCPVKGCGK KFFSHKYLVQ HRRVHMDDRP LQCPWKGCKM TFKWAWARTE HIRVHTGARP  1140
YVCNEDGCGQ TFRFVSDFSR HKRKTGHSVK KQVQER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	917	921	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein