PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973378.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1172aa MW: 130308 Da PI: 8.5438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	1054	1079	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C C++sF +k +L +H r+ + XP_024973378.1 1054 FACDmeGCNMSFDSKQELLVHKRNvC 1079 679999****************9877 PP
2	zf-C2H2	13.8	0.00017	1078	1101	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_024973378.1 1078 VCPvkGCGKKFFSHKYLVQHRRVH 1101 69999*****************99 PP
3	zf-C2H2	13	0.00031	1137	1163	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_024973378.1 1137 YVCNedGCGQTFRFVSDFSRHKRKtgH 1163 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1172 aa Download sequence
MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI 60 ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE 120 KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK 180 DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGKTWYG VPRDAAVAFE DVIRDHGYGG 240 EINPIVTFAT LGEKTTIISP EVLLKAGVPC CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE 300 AANIATPGWL RVARDAAIRR ASINCAPMVS HSQLLYDLAV SFSSSVPTSI KPEPRSSRLK 360 DKLKVEGEAL VKRLFFQDMM QNNHLLHILA KGSPIVVLPE NFIDRRIAFQ SNGTSRLSFG 420 LHTQEVDELK STHSSDSDDD VNLDRKPMRK FSSFCGRNNE LSLNGGKDAS SSSLASQTQN 480 TATGRYKGGE CDKTHDTGIF SCVTCGILCY ASVAIIRPTE ATANYLMSAD CRGISDLVAA 540 TDLFTNEDAS LVDPKSSSGQ MPKSTRDGLF DVPIKSTDEA QTVDDNPGIT PATADQKVNS 600 SLGLLALAYG DSSDSDDDRV EGDIHTNCSS DLPPNNKTAL LGAASSHGDH HDQDARGDMK 660 YINDQTFDCS VEFERNRSLK DSNCLTGKSL IAEQNCLSDV HVSEKAVRQI ENTPITTVCD 720 EESSRMHIFC LEHALEVEQR LRAVGGVHML LLCHQDYSSL DSEAKLVAKE LGIDDGWTDI 780 GFREGIQEDK EWIQSALDSE EATHGNRDWA VKLGINLFYS ASLSRSPLYS KQMPYNFVIY 840 NAFGHNSPSS SPTKPKPSSR QKKIVVAGKW CGKVWMSNQA HPLLVARDPE EQDDVKPARQ 900 SENTQMVISK NARKRKKNVL ESRRMSVKTK FPKVERSSSP APAPPPPPVD DLPTLNGGFR 960 RQPRTNLRNK QIRKETTPRN ILDQKARQFD MDSERESETD GGPSTRLRKR IIKPPSKELG 1020 VKIETKQAIK KQSGIKKAKK PPPAMEAREE DGEFACDMEG CNMSFDSKQE LLVHKRNVCP 1080 VKGCGKKFFS HKYLVQHRRV HMDDRPLQCP WKGCKMTFKW AWARTEHIRV HTGARPYVCN 1140 EDGCGQTFRF VSDFSRHKRK TGHSVKKQVQ ER

Sequence ? help Back to Top

Protein Sequence Length: 1172 aa Download sequence

MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI  60
ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE  120
KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK  180
DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGKTWYG VPRDAAVAFE DVIRDHGYGG  240
EINPIVTFAT LGEKTTIISP EVLLKAGVPC CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE  300
AANIATPGWL RVARDAAIRR ASINCAPMVS HSQLLYDLAV SFSSSVPTSI KPEPRSSRLK  360
DKLKVEGEAL VKRLFFQDMM QNNHLLHILA KGSPIVVLPE NFIDRRIAFQ SNGTSRLSFG  420
LHTQEVDELK STHSSDSDDD VNLDRKPMRK FSSFCGRNNE LSLNGGKDAS SSSLASQTQN  480
TATGRYKGGE CDKTHDTGIF SCVTCGILCY ASVAIIRPTE ATANYLMSAD CRGISDLVAA  540
TDLFTNEDAS LVDPKSSSGQ MPKSTRDGLF DVPIKSTDEA QTVDDNPGIT PATADQKVNS  600
SLGLLALAYG DSSDSDDDRV EGDIHTNCSS DLPPNNKTAL LGAASSHGDH HDQDARGDMK  660
YINDQTFDCS VEFERNRSLK DSNCLTGKSL IAEQNCLSDV HVSEKAVRQI ENTPITTVCD  720
EESSRMHIFC LEHALEVEQR LRAVGGVHML LLCHQDYSSL DSEAKLVAKE LGIDDGWTDI  780
GFREGIQEDK EWIQSALDSE EATHGNRDWA VKLGINLFYS ASLSRSPLYS KQMPYNFVIY  840
NAFGHNSPSS SPTKPKPSSR QKKIVVAGKW CGKVWMSNQA HPLLVARDPE EQDDVKPARQ  900
SENTQMVISK NARKRKKNVL ESRRMSVKTK FPKVERSSSP APAPPPPPVD DLPTLNGGFR  960
RQPRTNLRNK QIRKETTPRN ILDQKARQFD MDSERESETD GGPSTRLRKR IIKPPSKELG  1020
VKIETKQAIK KQSGIKKAKK PPPAMEAREE DGEFACDMEG CNMSFDSKQE LLVHKRNVCP  1080
VKGCGKKFFS HKYLVQHRRV HMDDRPLQCP WKGCKMTFKW AWARTEHIRV HTGARPYVCN  1140
EDGCGQTFRF VSDFSRHKRK TGHSVKKQVQ ER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	913	917	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein