PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973379.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1064aa MW: 118001 Da PI: 8.4137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	946	971	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C C++sF +k +L +H r+ + XP_024973379.1 946 FACDmeGCNMSFDSKQELLVHKRNvC 971 679999****************9877 PP
2	zf-C2H2	14	0.00015	970	993	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_024973379.1 970 VCPvkGCGKKFFSHKYLVQHRRVH 993 69999*****************99 PP
3	zf-C2H2	13.1	0.00028	1029	1055	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_024973379.1 1029 YVCNedGCGQTFRFVSDFSRHKRKtgH 1055 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence
MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI 60 ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE 120 KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK 180 DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGVTSPM TWYGVPRDAA VAFEDVIRDH 240 GYGGEINPIV TFATLGEKTT IISPEVLLKA GVPCCRLVQN AGEFVVTFPR AYHSGFSHGF 300 NCGEAANIAT PGWLRVARDA AIRRASINCA PMVSHSQLLY DLAVSFSSRN NELSLNGGKD 360 ASSSSLASQT QNTATGRYKG GECDKTHDTG IFSCVTCGIL CYASVAIIRP TEATANYLMS 420 ADCRGISDLV AATDLFTNED ASLVDPKSSS GQMPKSTRDG LFDVPIKSTD EAQTVDDNPG 480 ITPATADQKV NSSLGLLALA YGDSSDSDDD RVEGDIHTNC SSDLPPNNKT ALLGAASSHG 540 DHHDQDARGD MKYINDQTFD CSVEFERNRS LKDSNCLTGK SLIAEQNCLS DVHVSEKAVR 600 QIENTPITTV CDEESSRMHI FCLEHALEVE QRLRAVGGVH MLLLCHQDYS SLDSEAKLVA 660 KELGIDDGWT DIGFREGIQE DKEWIQSALD SEEATHGNRD WAVKLGINLF YSASLSRSPL 720 YSKQMPYNFV IYNAFGHNSP SSSPTKPKPS SRQKKIVVAG KWCGKVWMSN QAHPLLVARD 780 PEEQDDVKPA RQSENTQMVI SKNARKRKKN VLESRRMSVK TKFPKVERSS SPAPAPPPPP 840 VDDLPTLNGG FRRQPRTNLR NKQIRKETTP RNILDQKARQ FDMDSERESE TDGGPSTRLR 900 KRIIKPPSKE LGVKIETKQA IKKQSGIKKA KKPPPAMEAR EEDGEFACDM EGCNMSFDSK 960 QELLVHKRNV CPVKGCGKKF FSHKYLVQHR RVHMDDRPLQ CPWKGCKMTF KWAWARTEHI 1020 RVHTGARPYV CNEDGCGQTF RFVSDFSRHK RKTGHSVKKQ VQER

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence

MAEEVFPWLK SLPLAPEYHP TLAEFQDPIS FIFKIEEEAS KYGICKIVPP VSASPKKTAI  60
ANLNKSLSAR NPDSSPTFTT RQQQIGFCPR KHHRPVQKPV WESGEIYTVP QFEVKAKAFE  120
KSYLKKGSNS KKGLTPLEVE TLYWKAHVDK PFSVEYANDM PGSAFDQTVG GSAGKKQGKK  180
DIGDALTVGE TEWNMRGVSR AKGSLLKFMK EEIPGVTSPM TWYGVPRDAA VAFEDVIRDH  240
GYGGEINPIV TFATLGEKTT IISPEVLLKA GVPCCRLVQN AGEFVVTFPR AYHSGFSHGF  300
NCGEAANIAT PGWLRVARDA AIRRASINCA PMVSHSQLLY DLAVSFSSRN NELSLNGGKD  360
ASSSSLASQT QNTATGRYKG GECDKTHDTG IFSCVTCGIL CYASVAIIRP TEATANYLMS  420
ADCRGISDLV AATDLFTNED ASLVDPKSSS GQMPKSTRDG LFDVPIKSTD EAQTVDDNPG  480
ITPATADQKV NSSLGLLALA YGDSSDSDDD RVEGDIHTNC SSDLPPNNKT ALLGAASSHG  540
DHHDQDARGD MKYINDQTFD CSVEFERNRS LKDSNCLTGK SLIAEQNCLS DVHVSEKAVR  600
QIENTPITTV CDEESSRMHI FCLEHALEVE QRLRAVGGVH MLLLCHQDYS SLDSEAKLVA  660
KELGIDDGWT DIGFREGIQE DKEWIQSALD SEEATHGNRD WAVKLGINLF YSASLSRSPL  720
YSKQMPYNFV IYNAFGHNSP SSSPTKPKPS SRQKKIVVAG KWCGKVWMSN QAHPLLVARD  780
PEEQDDVKPA RQSENTQMVI SKNARKRKKN VLESRRMSVK TKFPKVERSS SPAPAPPPPP  840
VDDLPTLNGG FRRQPRTNLR NKQIRKETTP RNILDQKARQ FDMDSERESE TDGGPSTRLR  900
KRIIKPPSKE LGVKIETKQA IKKQSGIKKA KKPPPAMEAR EEDGEFACDM EGCNMSFDSK  960
QELLVHKRNV CPVKGCGKKF FSHKYLVQHR RVHMDDRPLQ CPWKGCKMTF KWAWARTEHI  1020
RVHTGARPYV CNEDGCGQTF RFVSDFSRHK RKTGHSVKKQ VQER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	805	809	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-149	C2H2 family protein