PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973380.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 398aa MW: 42686 Da PI: 8.3069

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.8	2.7e-40	84	183	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_024973380.1 84 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqfrssy 178 789******************************************************************99987777777777555554333334 PP TCP 89 ....k 89 XP_024973380.1 179 fnpnF 183 44440 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MDGGDDRFHH RPNFPFQLLE KKDDHVVCSS SATTTNYPSL AISTDTNHNN LNSTLRSNSS 60 TLLTTATTTA TAATSSTELS KKQPPKRTST KDRHTKVDGR GRRIRMPALC AARVFQLTRE 120 LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSMSV PSQFRSSYFN 180 PNFTLPQRRN LFPGIGSDNS SLNFGSTTIL NQMIQAKQEI RDNSVELSES PEEGMGRKRR 240 PPTEQDLSSL HQQQMGNYLL QSSSGAMAAS HASIPANFWM VANSNQHQAM SGDPIWTFPN 300 VNNSSLYRGT VSSGLHFMNF PTPVALLPSQ QAGISGGSSG GGGGGGGGYS EGQLSMLAAG 360 LNPYRPIFAS EQQPGGSQSH HDGGHGGEDR HDTSSHHT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MDGGDDRFHH RPNFPFQLLE KKDDHVVCSS SATTTNYPSL AISTDTNHNN LNSTLRSNSS  60
TLLTTATTTA TAATSSTELS KKQPPKRTST KDRHTKVDGR GRRIRMPALC AARVFQLTRE  120
LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSMSV PSQFRSSYFN  180
PNFTLPQRRN LFPGIGSDNS SLNFGSTTIL NQMIQAKQEI RDNSVELSES PEEGMGRKRR  240
PPTEQDLSSL HQQQMGNYLL QSSSGAMAAS HASIPANFWM VANSNQHQAM SGDPIWTFPN  300
VNNSSLYRGT VSSGLHFMNF PTPVALLPSQ QAGISGGSSG GGGGGGGGYS EGQLSMLAAG  360
LNPYRPIFAS EQQPGGSQSH HDGGHGGEDR HDTSSHHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	8e-60	TCP family protein