PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973420.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 317aa MW: 35714.1 Da PI: 4.8355

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.3e-20	96	149	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+++++ e++ +LAk lgL+ rqV +WFqNrRa++k XP_024973420.1 96 KKRRLTADQVRFLEKSFESDNKLEPERKMKLAKDLGLQPRQVAIWFQNRRARWK 149 56789************************************************9 PP
2	HD-ZIP_I/II	128.6	2.6e-41	95	187	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFe+++kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdy+ L+++y++lk++ + L ke+e+L++e++e XP_024973420.1 95 EKKRRLTADQVRFLEKSFESDNKLEPERKMKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDGLQESYNKLKANYDDLVKEKEKLKSEVQE 187 69***************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MAARSFLYGG GDAGGGGGGG GGGGSVLLTN KRVHCSSSLN TVDSFLLPRS SSFQGSRSMV 60 SFEDRGNGSG AQFFQSFDHE DNGDDEYDEY FHQPEKKRRL TADQVRFLEK SFESDNKLEP 120 ERKMKLAKDL GLQPRQVAIW FQNRRARWKT KQLEKDYDGL QESYNKLKAN YDDLVKEKEK 180 LKSEVQELSD KLQLQEKGTS DSSSTKSPSE PQRCRQILDE DVSKNMKTNG DHLSAKRIGF 240 EDGVHTISLL ERGDSSYVFE QDQSDGSVDE VENFSKIFLP SVDELKMENS EYQDPRSGNS 300 YYLGLPGDDQ AFGFWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	125	KKRRLTADQVRFLEKSFESDNKLEPERKMK
2	144	152	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-38	HD-ZIP family protein