PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973483.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 230aa    MW: 25325.7 Da    PI: 7.7062
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72.1e-20118152135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_024973483.1 118 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 152
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MHRSCSCDHH YQPNSFSMLF TMPPYHQHIC PYASSSSSSS PSSSSASVDC TLSLATPAST  60
RLTADNDYDL PESRHSSRFC WDFLQPDNSH SPAPPSHKTN RSGATNSSAA DSLLSRRCAN  120
CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRAAATATT VVGSGGDATE GYNQNSWMQS  180
TQKMPSCYSP AAVGSEFRFR DEVDDRDSTF LSWRLNVTDR AGLVHDFTRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.16e-40GATA family protein