PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973507.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 259aa MW: 31347.5 Da PI: 8.3598

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.1	1.5e-25	12	94	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++L+ +r e+++++ ++k++kplWe vs+km+erg++rs +qCk+kw+n+ +ryk +++e+++ ++++p++++l+ XP_024973507.1 12 QWSIQETRDLLMIRGELDSTFMETKRNKPLWEVVSAKMKERGYNRSVEQCKSKWKNILTRYKGYETIEEEG---MRQQFPFYKELQ 94 7******************************************************************97...56679***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MSEGGGGDRF PQWSIQETRD LLMIRGELDS TFMETKRNKP LWEVVSAKMK ERGYNRSVEQ 60 CKSKWKNILT RYKGYETIEE EGMRQQFPFY KELQAIFTNR MQRILWMEAE GIPSESNKRG 120 MWFLSDEEDE NEDRLVEKAN YSGKKKQKAI ESSTSSRGNS DNTNNGTINN LKEVLEEYMK 180 RQMDIEMQWM KRYDAKEEER RMKEMEWRQT METLEKERIM LDKQWREREE QRRKREEARI 240 EKRDSLITTL LEKLRSQGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	235	REREEQRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	7e-57	Trihelix family protein