PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973552.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 742aa    MW: 83353.7 Da    PI: 4.9824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.99.1e-1113697392373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+ v+++d   a++ L++++++asp gd+ qRla+ f+ +L+arla+++s+ly+  ++ + s    +e+l+a++++  ++P+ k++ +
  XP_024973552.1 369 RTLLVNCAQSVAADDRVTANEQLKQIRQHASPLGDAPQRLAHIFATGLEARLAGTGSQLYANKTALTIS---AAEKLKAYQVYLAACPFKKIAIF 460
                     689*********************************************************766666665...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++I+ea+++++++Hi+Df+i +G+QWp L++ La+Rp+gpp+lRiTg++ p++g   +e +eetg+rLa+++e+++vpfe+n+++++++e++
  XP_024973552.1 461 FANKMIYEAAATSSTLHIVDFGIAYGFQWPVLIKHLAERPGGPPKLRITGIELPRPGfrPAEGVEETGRRLANYCERFKVPFEYNAIATQNWETV 555
                     ********************************************************9*9****************************999***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L+++++E+laVn  ++ ++lld++v ++s+rd+vLk++++++P+++v +  + +++s+ F++rf eal ++s++fd+++a+l re+e+r +
  XP_024973552.1 556 KIEDLKLQRNECLAVNTLIRFKNLLDDTVVVNSPRDSVLKMIRDMKPDIFVQTVVNGSYSSPFFVTRFKEALFHFSSMFDMFDATLDREDEQRLN 650
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e+ gre++nv+acegaer+er et+++W+ r ++aGFk  pl+ + +++ ++ +r  + + +  +e+ +++++gWk+r L + S+W
  XP_024973552.1 651 FEKEFCGREAMNVIACEGAERVERPETYKQWQVRNSRAGFKLKPLNRELVSKLRAKVRAGYHKDFVFDEDGKWVLQGWKGRILRASSCW 739
                     ***********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    
MIMEPGHDEF TDYVNGLSLD ESIFPVFGQS PGITNGYRFR DEPLDLSFLE LPDPTPNSGP  60
CTSDLSSCRS SNFDSPDEFA DCVFKYINQI LVEEDMEARQ SMFHDPLALQ ATEKSFYEAL  120
GKNYPPPVLN VESPEENFFS SSSEYSTNSS TSGSNSTDSH WPGGDSLETK SPVAQTPSLE  180
YPLLSSFGST TSITNDGFST MDSLINTHLV ENIFTNSESI MQFNRGKEEA SKFLPPSKPL  240
VIDLDKYNLP SNSRDASPEV VVKEEIVEMD ISSSGFRGRK HYQLEDNVYE EERRSKQSAV  300
YVEEAELSEM FDRVVLCTDP GGPSMSACEE PPRHVKKKMQ QNGQAYGYSS GWITRSWGQG  360
SSGEAMDVRT LLVNCAQSVA ADDRVTANEQ LKQIRQHASP LGDAPQRLAH IFATGLEARL  420
AGTGSQLYAN KTALTISAAE KLKAYQVYLA ACPFKKIAIF FANKMIYEAA ATSSTLHIVD  480
FGIAYGFQWP VLIKHLAERP GGPPKLRITG IELPRPGFRP AEGVEETGRR LANYCERFKV  540
PFEYNAIATQ NWETVKIEDL KLQRNECLAV NTLIRFKNLL DDTVVVNSPR DSVLKMIRDM  600
KPDIFVQTVV NGSYSSPFFV TRFKEALFHF SSMFDMFDAT LDREDEQRLN FEKEFCGREA  660
MNVIACEGAE RVERPETYKQ WQVRNSRAGF KLKPLNRELV SKLRAKVRAG YHKDFVFDED  720
GKWVLQGWKG RILRASSCWV PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein