PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973583.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 388aa MW: 44624.9 Da PI: 8.4988

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.3	1.2e-15	59	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_024973583.1 59 SKYRGVSKHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 118 89*****************888855555447***********************98 PP
2	AP2	56.3	8.2e-18	161	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_024973583.1 161 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 212 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MALIDVKSEE TSVRRHINES PERRVKRRRR DLTLDCKTQQ LQPSQQTDQA SPTTVKRSSK 60 YRGVSKHRWT GRYEAHLWDK LSWNVTQKKK GKQVYLGAYD EEESAARAYD LAALKYWGSS 120 TFTNFPVFDY EKEIEIMQTV TKEEYLASLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG 180 RVFGNKYLYL GTYGTQEEAA RAYDIAAIEY RGVNAVTNFD LSTYIRWLKP GTQTPAACQE 240 PQTQRELKFK PFNNFGLIEE PEPSFLHYSK NSIVDEMSLP QKEEVSETKS PLSPSTKSSP 300 TALGLLLRSS IFRDLVQKNL NGGDKEDDAE DMKIQPQIVN DEEYTDIYYE ADDNILPFMI 360 SQNANAIKLQ GDFNTNYNFQ ESPLGSTL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MALIDVKSEE TSVRRHINES PERRVKRRRR DLTLDCKTQQ LQPSQQTDQA SPTTVKRSSK  60
YRGVSKHRWT GRYEAHLWDK LSWNVTQKKK GKQVYLGAYD EEESAARAYD LAALKYWGSS  120
TFTNFPVFDY EKEIEIMQTV TKEEYLASLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG  180
RVFGNKYLYL GTYGTQEEAA RAYDIAAIEY RGVNAVTNFD LSTYIRWLKP GTQTPAACQE  240
PQTQRELKFK PFNNFGLIEE PEPSFLHYSK NSIVDEMSLP QKEEVSETKS PLSPSTKSSP  300
TALGLLLRSS IFRDLVQKNL NGGDKEDDAE DMKIQPQIVN DEEYTDIYYE ADDNILPFMI  360
SQNANAIKLQ GDFNTNYNFQ ESPLGSTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	31	RRVKRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-94	AP2 family protein