PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973657.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28863 Da    PI: 10.1346
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++
  XP_024973657.1  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59
                    79***********************************************86 PP
2K-box100.42.5e-3382173899
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + e++++ s++ e++kL+++ie L++++Rh++GedLe+L+l+eLq++eqqLe++lk+iR++Kn++++e+i+el kke++lqe+n++L+kkl+
  XP_024973657.1  82 APETETQGSWTLESSKLRAKIEVLEKNIRHYVGEDLEPLNLRELQSVEQQLETALKRIRTRKNQVMHESISELHKKERALQEQNNSLSKKLK 173
                     456777899*********************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATH  60
SSMEAILERY ERYSYAEKLL TAPETETQGS WTLESSKLRA KIEVLEKNIR HYVGEDLEPL  120
NLRELQSVEQ QLETALKRIR TRKNQVMHES ISELHKKERA LQEQNNSLSK KLKANEKNGD  180
QRNAGFQLPQ SQPPPPPPPP PPPPPPPPHH LAPLTFGSGS FQGAAVMRDD ESIQAHTNMS  240
ASMMPPWLLR HINQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-90MIKC_MADS family protein