PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973798.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 551aa MW: 59402.5 Da PI: 8.5368

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024973798.1 74 FVCEICNKGFQRDQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	15.5	5.1e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_024973798.1 150 WKCDKCSKKYAVQSDWKAHQKTC 172 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MSNMTGDEAS FSSGEEGDDA NKHLATHFHA STSLPPPPPP PPPPKKKRNL PGTPDPTADV 60 IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTSTEI KKRVYVCPEP 120 SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA VQSDWKAHQK TCGTREYKCD 180 CGTIFSRRDS FITHRAFCDA LTEENNKVNQ GMLQHQHMSD HLMSSKSIDS GTNDLMGLPD 240 FNNYDLKNPI KPLPQDLVPM SFKPLNMSGG MFSSSSGALS GNPRGGSSSS SGLQLSSSNG 300 PLGYGYFQQD TSKGGGLLSG PAGHMSATAL LQKAAQMGAT ASNGINSPMM QKSYVTSMVG 360 PDQLNSPGPR PTLPYGLQRV GPYDNFHIQP NQTAIGAGGR INVGGEGYNP LQKPNPQDMF 420 GSGLGPSLNP NLGSNEMGIY GELLMRGDQS HGFVKNIENH EDGSNGNSVL IQGRGNPTMG 480 RSPSIVGGGG GGGNDTLTVD FLGIGGSRSL TIQEQQQRLS GFEAASQVMN PFQQQLINED 540 SSAIEKPIWD E

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MSNMTGDEAS FSSGEEGDDA NKHLATHFHA STSLPPPPPP PPPPKKKRNL PGTPDPTADV  60
IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTSTEI KKRVYVCPEP  120
SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA VQSDWKAHQK TCGTREYKCD  180
CGTIFSRRDS FITHRAFCDA LTEENNKVNQ GMLQHQHMSD HLMSSKSIDS GTNDLMGLPD  240
FNNYDLKNPI KPLPQDLVPM SFKPLNMSGG MFSSSSGALS GNPRGGSSSS SGLQLSSSNG  300
PLGYGYFQQD TSKGGGLLSG PAGHMSATAL LQKAAQMGAT ASNGINSPMM QKSYVTSMVG  360
PDQLNSPGPR PTLPYGLQRV GPYDNFHIQP NQTAIGAGGR INVGGEGYNP LQKPNPQDMF  420
GSGLGPSLNP NLGSNEMGIY GELLMRGDQS HGFVKNIENH EDGSNGNSVL IQGRGNPTMG  480
RSPSIVGGGG GGGNDTLTVD FLGIGGSRSL TIQEQQQRLS GFEAASQVMN PFQQQLINED  540
SSAIEKPIWD E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-94	C2H2 family protein