PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973815.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ZF-HD
Protein Properties Length: 256aa    MW: 28822.6 Da    PI: 10.2054
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.61.5e-282883458
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    + + +ClkNhAas+Gg+a+DGCgEfm++++++ ++ +alkC ACgCHRnFH rev+
  XP_024973815.1 28 FAFGKCLKNHAASTGGYALDGCGEFMATPNSTpTDLTALKCHACGCHRNFHHREVN 83
                    6799*************************9999********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
METPTRRQPN RTGQQLPTNR QNLPPVAFAF GKCLKNHAAS TGGYALDGCG EFMATPNSTP  60
TDLTALKCHA CGCHRNFHHR EVNQLQSRME RIIECPYQPQ QYHLHPPTPP PPSRLVAIAN  120
NTRGTLDSLS PPPIPSSYCP APPHMFFAFN PGFSAPQPVD KNRPSIITTG SNRRRKKRFR  180
SKFSEEQKAK MQEFAERIGW KMLKSEEETI VGFCNQIGVD KGVFKVWMHN HKNIIVRDNH  240
HQNRRDDGAN GSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178RRRKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-37ZF-HD family protein