PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973819.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-X1

Protein Properties

Length: 864aa MW: 96989.9 Da PI: 8.4491

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.3	5.2e-06	180	198	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG HkC lCH+GpCp Cp+ XP_024973819.1 180 CG-HKCLLLCHPGPCPACPK 198 .*************96 PP
2	zf-NF-X1	17.9	6.9e-06	339	358	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+H+C + CH+GpC + C+ XP_024973819.1 339 CGIHRCPERCHRGPCVEtCR 358 ***************99886 PP
3	zf-NF-X1	18.1	6e-06	392	411	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ XP_024973819.1 392 CGRHACKRRCCDGDCPPCSE 411 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence
MTSTVPHRPP PSHPSDSDSS DSDSTSTTPK PQHHTDFSNT IFRSYIEISG LESPDLTKIR 60 SFLTSSRSGA LSCLICLERI RPSDPTWSCS SRCFAVFHLL CIQSWARQSS DLSSLRAASR 120 GADDRNSTWN CPKCRIEFPK TLIPKTYTCF CGKVENPPHD PWILPHSCGE ICNRSLKYDC 180 GHKCLLLCHP GPCPACPKLI KSRCFCGGVQ DIKRCGFKEF SCNKTCSKLL DCKAHCCLEI 240 CHDGDCPPCR AEGVYKCHCG KVQEKRECFQ RDFRCETPCE KLLGCGKHVC SKGCHEGECG 300 DCPLQGKRTC PCGKRIYEGM ACDVVVPSCG GTCDKKLICG IHRCPERCHR GPCVETCRIV 360 ITKSCKCGSL KKQVPCYQDV VCERKCQRVR DCGRHACKRR CCDGDCPPCS EICDKKLRCR 420 NHKCPSPCHR GACAPCPVMV TISCFCGETH FEVPCGTEKE QKPPKCSKRC RINPLCRHKS 480 ITKPHKCHYG ACPPCRLVCD EDYPCGHKCK LRCHGPIPPP NPEFTLRPKK KKPNLPIEST 540 PGSVCPPCPE LVWRSCVGEH VGAEKMMVCS NKAKFSCDNY CGNLLPCGNH FCTKTCHALK 600 IPGSGRYEKG EQCEECNLRC QEERKPMCPH PCPLRCHPGE CPPCKVLIKR SCHCGAMVHV 660 FECLYYNSLS EKEQIAVRSC GGPCHRKLPN CTHLCPEICH PGHCSSPEKC SKKVVVRCGC 720 QTLKKEWACQ QVQAAYHSSG RDPKDISKNQ FGLGLLSCNS DCKSKVKVDD TDLHLRKSKA 780 PEKKEPDVEN HARKRKRRKD KVHQDHQVST FQKIMEFLRK LLVVLVIVAS LIAVAYYGYK 840 GLLWVNDWMN EIEAQRERKR YPRM

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence

MTSTVPHRPP PSHPSDSDSS DSDSTSTTPK PQHHTDFSNT IFRSYIEISG LESPDLTKIR  60
SFLTSSRSGA LSCLICLERI RPSDPTWSCS SRCFAVFHLL CIQSWARQSS DLSSLRAASR  120
GADDRNSTWN CPKCRIEFPK TLIPKTYTCF CGKVENPPHD PWILPHSCGE ICNRSLKYDC  180
GHKCLLLCHP GPCPACPKLI KSRCFCGGVQ DIKRCGFKEF SCNKTCSKLL DCKAHCCLEI  240
CHDGDCPPCR AEGVYKCHCG KVQEKRECFQ RDFRCETPCE KLLGCGKHVC SKGCHEGECG  300
DCPLQGKRTC PCGKRIYEGM ACDVVVPSCG GTCDKKLICG IHRCPERCHR GPCVETCRIV  360
ITKSCKCGSL KKQVPCYQDV VCERKCQRVR DCGRHACKRR CCDGDCPPCS EICDKKLRCR  420
NHKCPSPCHR GACAPCPVMV TISCFCGETH FEVPCGTEKE QKPPKCSKRC RINPLCRHKS  480
ITKPHKCHYG ACPPCRLVCD EDYPCGHKCK LRCHGPIPPP NPEFTLRPKK KKPNLPIEST  540
PGSVCPPCPE LVWRSCVGEH VGAEKMMVCS NKAKFSCDNY CGNLLPCGNH FCTKTCHALK  600
IPGSGRYEKG EQCEECNLRC QEERKPMCPH PCPLRCHPGE CPPCKVLIKR SCHCGAMVHV  660
FECLYYNSLS EKEQIAVRSC GGPCHRKLPN CTHLCPEICH PGHCSSPEKC SKKVVVRCGC  720
QTLKKEWACQ QVQAAYHSSG RDPKDISKNQ FGLGLLSCNS DCKSKVKVDD TDLHLRKSKA  780
PEKKEPDVEN HARKRKRRKD KVHQDHQVST FQKIMEFLRK LLVVLVIVAS LIAVAYYGYK  840
GLLWVNDWMN EIEAQRERKR YPRM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	793	798	RKRKRR
2	793	799	RKRKRRK
3	793	800	RKRKRRKD
4	793	801	RKRKRRKDK
5	794	799	KRKRRK
6	795	803	RKRKRRKDK
7	795	800	RKRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein