PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973891.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 32083.9 Da PI: 8.2854

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	144	198	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+Fe ++ ++ ++++eLA++l+L rqV vWFqNrRa+ k XP_024973891.1 144 RKKLRLTKPQSALLEEAFELHSSLNPKQKQELARELKLRPRQVEVWFQNRRARTK 198 678899***********************************************98 PP
2	HD-ZIP_I/II	118.1	5e-38	144	233	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEe Fe ++ L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E dye+Lk+++++l++en+rL+ke +eL+ +l XP_024973891.1 144 RKKLRLTKPQSALLEEAFELHSSLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTELDYEHLKKCCETLRDENRRLHKELQELK-AL 233 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGFDRVCDTG LVLGLSLNSS PSMFKPNTMG SGSGSGSTKE SCVTENMPSF EPSLTLGLSG 60 DHRDPNTSWK RLVVGGGHGG VYRQDSTVIS GGGSSFSSLS VKREREVGSE ESERVSNDNN 120 YSSRVMSTTS VDDVEDDDGT VNGRKKLRLT KPQSALLEEA FELHSSLNPK QKQELARELK 180 LRPRQVEVWF QNRRARTKLK QTELDYEHLK KCCETLRDEN RRLHKELQEL KALKSSQPFY 240 MQLPAATLTM CPSCERVGDT NSATTTSKNP FTMAAKPHFF NSFTNPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	201	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-79	HD-ZIP family protein