PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024973907.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 193aa MW: 21753 Da PI: 9.2446

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024973907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	20	79	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ Le +++ ++p+a+++++++ +l +++ ++V++WFqN++a++++ XP_024973907.1 20 SRWCPTPEQVMLLEGMYRGgLKTPTATQIQQITGRLsiygKIQGKNVFYWFQNHKARDRQ 79 7***************99***********************************996 PP
2	Wus_type_Homeobox	109.7	1.6e-35	19	80	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+PtpeQ+++Le +y+ Gl+tP++ +iq+it +L+ yGki++kNVfyWFQN+kaR+rqk XP_024973907.1 19 GSRWCPTPEQVMLLEGMYRGGLKTPTATQIQQITGRLSIYGKIQGKNVFYWFQNHKARDRQK 80 58***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MTSAVPVKGT TSGGGGGSGS RWCPTPEQVM LLEGMYRGGL KTPTATQIQQ ITGRLSIYGK 60 IQGKNVFYWF QNHKARDRQK LRKKLMALYH QHRLYPTHDH HPFLPTLHPQ GGGVEDASNC 120 KGMMDNWKVD LPSNQTCKFM CDCPLMSMMM MDNHGTTPYC TRVPPKTLQL FPVTTTDLKD 180 DDDHHQFTIT TKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-34	WOX family protein