PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024973973.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26447.2 Da    PI: 6.5246
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024973973.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.6e-281666151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ yss
  XP_024973973.1 16 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFHYSS 66
                    68***********************************************96 PP
2K-box50.87e-18991791999
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++akL ke+ +   ++R+l Ge+L+ L ++eL+qLe+ Le +l ++ +kK e+++++i++lq+k  +l een +Lr+++ 
  XP_024973973.1  99 ANYAKLSKEVAERTLQLRRLRGEELHLLGIEELHQLEKSLEAGLGRVVTKKGEVIMNEISRLQEKGVQLMEENDRLRQEMV 179
                     6799******9999999*************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MCASGLMMAR EKIQIKKIDN ATARQVTFSK RRRGLFKKAE ELSVLCDADV ALIIFSSTGK  60
LFHYSSSSMK EILERHSLHS KNLEKLDQPS LELQLVEDAN YAKLSKEVAE RTLQLRRLRG  120
EELHLLGIEE LHQLEKSLEA GLGRVVTKKG EVIMNEISRL QEKGVQLMEE NDRLRQEMVE  180
ISNARKQIHT DAENVIGEED QSSESVANIC NSAGPSQDYE SSYTSLKLGL PYRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-89MIKC_MADS family protein