PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974023.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 257aa    MW: 28693.5 Da    PI: 8.2348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-114084146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r  WT+ Ed +l++ v  +Gg  W+  ++ +  gR++ +ck rw++
   XP_024974023.1 40 RRQWTKMEDMKLLKHVVAHGGTKWNILSEQLH-GRSPDSCKVRWFN 84
                     678*****************************.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MASSSSQSAQ SVVSDEHQRE VKRVKEVRNR THASHTSMAR RQWTKMEDMK LLKHVVAHGG  60
TKWNILSEQL HGRSPDSCKV RWFNKWNPIL QKKYGADVEA CVVKDDDHAR KHTKVTSSAK  120
TAVRLPIDVE SGSSTFVPLE RPSEHGMTDN SLEITPMRIS FFNGTSDVEE QEILVGNCRK  180
CKRAMGGFQA NGEIYMVSMY DADPMAVVSS CMNLLDSIKY ESNNNQQPAV ANVFLPQPPP  240
PSPSTPKFID FLGVGSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-12MYB family protein