PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974066.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 232aa    MW: 25795.6 Da    PI: 5.6565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1893143255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  XP_024974066.1  93 SYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFDSAEAAAMAYDQAAFSMRG 143
                     69*******.**********422...25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MAEFSSIQDY HPTGDYSSES SYSWDELLFH HHSLPFNLND SQDMLLFDML ATNGVASMAA  60
DQSSESNIST AGVIKEEEVT SGSPPEKSQK EKSYRGVRRR PWGKYAAEIR DSTRHGVRVW  120
LGTFDSAEAA AMAYDQAAFS MRGSGAVLNF PAERVKESLQ EMNYRFEEGC SPVVALKKRH  180
SLRKKPVSRK KKQVSGGGGT NLENNMLVFE DLGADYLEQL LTSSESSSTI SW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177192KKRHSLRKKPVSRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-57ERF family protein