PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974073.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 823aa    MW: 91815.9 Da    PI: 6.2339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_024974073.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_024974073.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp119.13.6e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rWpnS+Wrs+k
  XP_024974073.1 253 AAHAAATSSCFTIFYNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPTRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    
MKLSTSGSGQ QPQEGEKKCL NSELWHACAG PLVSLPTVGA RVIYFPQGHS EQVAATTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPVELGIPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATS SCFTIFYNPR ASPSEFVIPL SKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG ASSFQDSRDD AVNGMAWLRG ETGEQALHSL NFQSSGMFPW  420
MQQRVDPSFL QSNLNQQYQA VLAAGLQSVG SGDALKQQLL QFQQPVQYLQ HSGTHSPLLT  480
QQSIPQQFVH GQTQVLDNLP RSLQPQEGQQ QQHNSYPDTY LMQNEQLQAR QQSSVPSPMF  540
PKTDFMDSNP KFTSNVAPLM QNMLGSLCSE GSSSNLSNFS RTSQLMLNEH QSNQQSWVSK  600
FAQSQVKTSS TSPSVLPYQG KDAGVEQESS SLDAQNHALF SAINIDSSGL LLPTIDTDLS  660
TMPSAGSGFQ NSPYAGYMQD SSELLHSGGQ VDQPNRNRTF VKVYKSGCVG RSLDITRFNS  720
YHELREELGQ MFGIEGLLED PQRSGWQLVF VDRENDVLLL GDDPWEAFVN SVWYIKILSP  780
EDVQQLGKQE VESFGQNSGE RIGNDGRDHH LSGLPPSMGS LDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein