PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974213.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 366aa MW: 41644.9 Da PI: 8.5396

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.5	2.5e-32	34	92	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ldDgynWrKYGqK+vkgse+prsYY+Ct+++C+++kkve+sa d++++ei+Y+g+H+h+k XP_024974213.1 34 LDDGYNWRKYGQKQVKGSENPRSYYKCTYRNCSMRKKVETSA-DGDITEIVYKGNHDHPK 92 59**************************************.*************85 PP
2	WRKY	102.9	1.8e-32	198	256	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d + v++tYeg+H+h+ XP_024974213.1 198 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTLGCSVRKHVERASHDVRSVITTYEGKHTHD 256 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MQSFSPEIST VKTNSKPKQS FQSNYNHQSS QKKLDDGYNW RKYGQKQVKG SENPRSYYKC 60 TYRNCSMRKK VETSADGDIT EIVYKGNHDH PKPQSTKRLS SSSASSNSFV VHQFNEYPDQ 120 SNGSRQSDLV GTPENSSNSI GDDEFSRSRS GGDEFLEDEA HAKRLKMNNE NEMISMEGSR 180 TIREPRVVVQ TLSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTLGCS VRKHVERASH 240 DVRSVITTYE GKHTHDVPLA RGASHRPLPP TNPGNSVATM TIRPSEWSHH QPNNSMINTV 300 YESWLPSSQE TPFTLEMLNN PGGHELSGFD NRIRTGYMNR QPNLDNVFSI AKDEPKDDNF 360 LESLLY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MQSFSPEIST VKTNSKPKQS FQSNYNHQSS QKKLDDGYNW RKYGQKQVKG SENPRSYYKC  60
TYRNCSMRKK VETSADGDIT EIVYKGNHDH PKPQSTKRLS SSSASSNSFV VHQFNEYPDQ  120
SNGSRQSDLV GTPENSSNSI GDDEFSRSRS GGDEFLEDEA HAKRLKMNNE NEMISMEGSR  180
TIREPRVVVQ TLSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTLGCS VRKHVERASH  240
DVRSVITTYE GKHTHDVPLA RGASHRPLPP TNPGNSVATM TIRPSEWSHH QPNNSMINTV  300
YESWLPSSQE TPFTLEMLNN PGGHELSGFD NRIRTGYMNR QPNLDNVFSI AKDEPKDDNF  360
LESLLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-99	WRKY family protein