PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974242.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WOX
Protein Properties Length: 260aa    MW: 28793.9 Da    PI: 5.9594
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.83.4e-2279139257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  XP_024974242.1  79 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 139
                     89*****************99**************************************97 PP
2Wus_type_Homeobox101.46.3e-3379141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+l+++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
     XP_024974242.1  79 RQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 141
                        79***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MEQDEGNNNN NNGGMFVKVM TDEQMEVLRK QIAIYATICE QLVDLHKSLT SHHDLAGVRL  60
GNLYSDPLIT SGGHKFSGRQ RWTPTPVQLQ ILERLFEQGN GTPSKQKIKE ITSELSQHGQ  120
ISETNVYNWF QNRRARSKRK QQVSAPNNGE SEVETEVESP KLQQNSASTA DDNLCFQNPN  180
VSSGISSVDQ RAKKVEPVFP SDASSKPAGN VGQMSYYGSM LANPTGTCVD AGMDRIIGKM  240
EVPGSYHQSY MQGDEYNMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARSKRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.14e-74WOX family protein