PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974398.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 257aa    MW: 30050.5 Da    PI: 6.7276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv +v+ +G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_024974398.1 11 KGPWTEHEDVQLVFYVNTFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58
                     79********************************************97 PP
2Myb_DNA-binding54.42.8e-1764109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_024974398.1  64 RGRMTPHEERLVLEYHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 109
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MRHVEDESIR KGPWTEHEDV QLVFYVNTFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP  60
GLKRGRMTPH EERLVLEYHS KWGNRWSRIA RKLPGRTDNE IKNYWRTHMR KKAQESKRGS  120
SPSSSFSNSS SSSSFCTNDP IVDSMPMTET KERSFYDTGG IEMVPNSRPK NNTTLMKYAK  180
DDSEEHEGIY SMDEIWKDID LLEIDDGMKP VFDPYSEIMP SHIWDYSSIN SFWTTDSGQE  240
EFSTYMAFPA TSERLLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-81MYB family protein