PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974399.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 235aa    MW: 27282.5 Da    PI: 8.2194
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-174287148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgr+T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_024974399.1 42 RGRMTPHEERLVLEYHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 87
                     89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGFHSKSFRF EGGGRYIHIG LNRTGKSCRL RWVNYLHPGL KRGRMTPHEE RLVLEYHSKW  60
GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQESKRGSSP SSSFSNSSSS SSFCTNDPIV  120
DSMPMTETKE RSFYDTGGIE MVPNSRPKNN TTLMKYAKDD SEEHEGIYSM DEIWKDIDLL  180
EIDDGMKPVF DPYSEIMPSH IWDYSSINSF WTTDSGQEEF STYMAFPATS ERLLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.47e-72MYB_related family protein